I have to say that this is the coolest scRNA resource so far in 2019! Dynverse had a suite of tools that helps researcher to select, run...

NB: This is just a commentary It all began when I was looking into the latest paper of Dynverse (https://dynverse.org/) (now published in...

It has been about one month now that I am getting my head spinning to learn a lot of bits and pieces about spectral clustering (useful...

Okay, so this week I looked into another ECCITE-seq data: the K562 cells infected with a CRISPr library, tagged with cell-hashing...

So before losing myself in learning about diffusion maps and many other spectral clustering techniques, I am quite excite to see the...

In this post, I am looking into an earlier topic solved by Seurat infering spatial location of cells through marker gene expression in...

It has been a while since my last update, mainly because there are quite a few things to learn before i could implement random forest on...

Cell differentiation is one of the fields that actively employ scRNA-seq to answer intersting questions. scRNA-seq has the high enough...

It has been a recurring theme on getting the clustering correct in my quest to learn about ScRNA-seq. In the previous posts I have...

Today I am going to try out a new way to aggregate sc-RNA seq data from independent experiments. The new methodology is called scvis....

After deriving the distance matrix from the data, I can now move on to clustering the cells based on expression profiles. I usually...

Clustering methods are heavily employed in single-cell RNA analysis. In this post, I would like to learn more about the underlining...

With the increasing published scRNA-seq studies, one of the ideals is to compare the findings across studies to confirm 1) novel subtypes...

It looks like that Euclidean and Manhattan both have lower within cluster distance and higher between cluster distance but Inner-product...

Single-cell sequencing generate a lot of noises. One of the sources comes from sequencing low-quality cells. During the high-throughput...